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Book Review: Protein and Peptide Analysis by LC-MS Experimental Strategies

A review of the book entitled Protein and Peptide Analysis by LC-MS–Experimental Strategiesedited by Thomas Letzel, published by the Royal Society of Chemistry, Cambridge, UK (2011) and reviewed by Jennifer Beck

Letter: A simple ion source set-up for desorption/ionization on silicon with ion mobility ...

Using a simple ion source set-up, laser desorption/ionization on silicon (DIOS) was demonstrated with the use of a custom-made drift tube ion mobility spectrometer (IMS), mounted on a commercial triple quadrupole mass spectrometer, and with an IMS equipped with a Faraday plate detector. DIOS was tested by mobility measurement of tetrapropylammonium iodide, tetrabutylammonium iodide and tetrapentylammonium iodide, whilst 2,6-di-tert-butylpyridine was used as a standard. The reduced mobilities measured for the test halides are in concordance with previously obtained ion mobility spectrometry–mass spectrometry data.

Characterization by gas chromatography–mass spectrometry of diterpenoid resinous ...

A combined gas chromatography–mass spectrometry approach has been used for the characterization of two lumps of resin and 17 adsorbed residues on Roman-age vessels, mainly amphorae, from northern Greece. The data show that a diterpenic resin from plants of the Pinacae family is the main component of the tarry material associated with the analyzed archaeological samples. The identification and mass spectrometric fragmentation of several characteristic diterpenoid biomarkers is discussed. The abundance of secondary products identified in the archaeological samples suggests that the oxidative degradation of abietic acid and dehydroabietic acid to aromatic products was the main pathway. Of particular interest is the presence of characteristic saturated abietane hydrocarbons in one sample, which indicate that a reductive process also occurred on a small scale. The overall similarity in the composition of the residues suggests the common use of pine tar as a waterproofing and sealing agent at different sites in northern Greece during the Roman period.

Rapid characterization of N-linked glycosylation site using non-specific protease digestion of ...

Rapid identification of glycosylation sites of glycoproteins is urgently needed in glycoproteomics study. In the present work, a rapid and simple method based on non-specific digestion of gel-separated glycoproteins and matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry was described, which can efficiently identify the N-linked glycosylation sites. One-step in-gel digestion of Ribonuclease B (RNase B) by proteinase K was employed to generate glycopeptides with short and discrepant peptide composition. When compared with glycopeptides prepared by two-step in gel-digestion using trypsin-proteinase K or trypsin-pronase, the direct proteinase K treatment showed obvious superiority in both glycopeptide recovery and preparation simplicity. Most importantly, it helps to generate greater variety of glycopeptide series with rich information for glycosylation site identification. In addition, binary matrices 5-chloro-2-mercaptobenzothiazole (CMBT) /2,5-dihydroxybenzoic acid (DHB) were found to form homogeneous microcrystal on the target with the purified glycopeptides, leading to improved detection sensitivity. Thus, the present work provides an optimized solution to speed up the characterization of N-linked glycosylation sites in glycoproteins.

Collision-induced dissociation of flavonoid 7-O- diglycoside cations: elucidation of important ...

Flavonoids are ubiquitous molecules in nature and are found in almost all plants, including fruits and vegetables. Although flavonoids are structurally similar, subtle differences in their structures lead to important changes in their biological activities. Over years, mass spectrometry has become an ideal tool for the characterization of those important molecules. In particular to overcome the challenge of structure assignment, tandem mass spectrometry was used in numerous studies. In the present study, we submitted selected flavonoid 7-O-diglycosides to electrospray ionization to prepare different kinds of flavonoid ions, i.e. protonated, sodium-cationized and copper-cationized molecules. Most of the investigated reactions are already described in the literature in several papers and the aim of the present study is to present concise and coherent relations between CID reactions, cationizing agents and flavonoid 7- O-diglycoside structures. Some insights in the reaction mechanisms and the role of the cationizing particles will also be attempted

Review: Formation of peptide radical ions through dissociative electron transfer in ternary ...

The formation and fragmentation of odd-electron ions of peptides and proteins is of interest to applications in biological mass spectrometry. Gas-phase redox chemistry occurring during collision-induced dissociation of ternary metal–ligand–peptide complexes enables the formation of a variety of peptide radicals, including the canonical radical cations, M^+•, radical dications, [M+H]^2+•, radical anions, [M–2H]^–• and phosphorylated radical cations. In addition, odd-electron peptide ions with well-defined initial location of the radical site are produced through side-chain losses from the radical ions. Subsequent fragmentation of these species provides information regarding the role of charge and location of the radical site on the competition between radical-induced and proton-driven fragmentation of odd-electron peptide ions. This account summarizes current understanding of the factors that control the efficiency of the intramolecular electron transfer (ET) in ternary metal–ligand–peptide complexes resulting in formation of odd-electron peptide ions. Specifically, we discuss the effect of the metal center, the ligand and the peptide structure on the competition between the ET, proton transfer (PT) and loss of neutral peptide and neutral peptide fragments from the complex. Fundamental studies of the structures, stabilities and the energetics and dynamics of fragmentation of these complexes are also important for detailed molecular-level understanding of photosynthesis and respiration in biological systems.

Review: Mass spectrometry of surfactant aggregates

In contrast with the enormous amount of literature produced during many decades in the field of surfactant aggregation in liquid, liquid crystalline and solid phases, only a few investigations concerning surfactant self-assembling in the gas phase as charged aggregates have been carried out until now. This lack of interest is disappointing in view of the remarkable theoretical and practical importance of the inherent knowledge. The absence of surfactant–solvent interactions makes it easier to study the role of surfactant–surfactant forces in determining their peculiar self-assembling features as well as the ability of these assemblies to incorporate selected solubilizate molecules. Thus, the study of gas-phase surfactant and surfactant–solubilizate aggregates is a research subject which has exciting potential, including mass and energy transport in the atmosphere, origin of life and simulation of supramolecular aggregation in interstellar space. On the other hand, the structural and dynamic properties of surfactant aggregates in the gas phase could be exploited in a number of interesting applications such as atmospheric cleaning agents, transport and protection of pulmonary drugs or biomolecules and as nanoreactors for specialized chemical reactions in confined space. Spectrometric techniques, together with molecular dynamics simulations, have been the principal investigative tools in this field and appearto be particularly suited to gaining fundamental information on the structure and stability of surfactant-based supramolecular aggregates, charge state effects, entrapment of solubilizate molecules, preferential solubilization sites and chemical reactions localized in a single organized aggregate. The main aim of this review is to present the actual state of the art in this novel and exciting research field underlining the knowledge acquired up to now as well as the aspects needing a more deep understanding. Moreover, intriguing departures of the behavior of surfactant solutions under electrospray ionization conditions from that of ionic, polar and apolar analytes will be discussed.