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European Journal of Mass Spectrometry
Volume 13 Issue 4, Pages 307–309 (2007)
doi: 10.1255/ejms.880

 
Letter: Specific isotope labeling for the identification of free N-terminal peptide of proteins separated by polyacrylamide gel electrophoresis
Aniel Sanchez, Yassel Ramos, Yanni Solano, Luis Javier González, Lazaro Betancourt, Jeovanis Gil, Gabriel Padron and Vladimir Besada*
Mass Spectrometry Laboratory, Department of Proteomics, Center for Genetic Engineering and Biotechnology, Havana, Cuba. E-mail: vladimir.besada@cigb.edu.cu
ABSTRACT:
We report here a method for the identification of free N-terminal peptide of in gel digested isolated proteins. It is based in the difference between the isotopic ion distribution of N-terminal peptide and internal peptides. After guanidination of lysine residues, the primary amino groups of the gel- entrapped protein are blocked with an equimolar mixture of normal and deuterated acetic anhydride. Upon MS analysis internal peptides display a normal isotopic ion distribution while the N-terminal peptide shows a complex isotopic ion distribution.

Keywords: N-terminal peptide, proteins, identification

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