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Modeling deoxyribonucleic acid and ribonucleic acid damage in the gas phase F. Tureček Department of Chemistry, University of Washington, Seattle, WA 98195-1700, USA
ABSTRACT:
This short review outlines the tandem mass
spectrometric methods for the generation and analysis of transient nucleobase radicals relevant to deoxyribonucleic acid and ribonucleic acid damage. Radical hydrogen atom
adducts to uracil, adenine, cytosine and N-methylcytosine were generated by femtosecond electron transfer to the corresponding gas-phase cations in fast beams at 8
keV kinetic energy. Radical unimolecular dissociations were monitored by product analysis following collisional ionization to cations or anions using
neutralizationreionization mass spectrometry. The radical energetics and dissociation kinetics were further analyzed by mapping the potential energy surfaces by high-
level ab initio calculations in combination with RiceRemsbergerKasselMarcus calculations of unimolecular rate constants. This first-principles-
based approach allows one to model radical dissociations occurring from doublet ground electronic states of radical intermediates, assign reaction mechanisms and derive
quantitative branching ratios for dissociation channels that are in agreement with experiments. Theoretical analysis also provides distinction between radical dissociations
occurring on the ground and excited electronic state potential energy surfaces. Specific characterization of excited state dissociations of nucleobase and other polyatomic
radicals remains a challenging topic for both experimentalists and computational chemists.
Keywords:
DNA damage, nucleobase radicals, electron transfer, proton affinities
neutralizationreionization mass spectrometry, ab initio calculations
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